Homepage of Stephan Preibisch                     

HFSP Fellow in the labs of Robert H. Singer and Eugene Myers at the Albert Einstein College and the MPI-CBG
Visiting Scientist at the HHMI Janelia Farm Research Campus

Conferences / Talks / Events

Upcoming

Talk@Janelia Farm Transcription Imaging Consortium Meeting
(20-22 Oct 2014, Janelia Farm Research Campus, Ashburn, USA)
tbd

Hackathon@University of Wisconsin-Madison
(13 Oct-18 Oct 2014, Madison, USA)
Organized by Kevin Eliceiri with focus on integration of ImgLib2 and ImageJ2

2014

Teaching@EMBO Light Sheet Microscopy Practical Course
(18-29 August 2014, Dresden, Germany)
-- organized by Pavel Tomancak

Teaching@EMBO 3D Developmental Imaging Practical Course
(4-12 July 2014, Dresden, Germany)
-- organized by Gabriel G. Martins

Talk@GE Global Research
(15 May 2014, GE Global Research, Niskayuna, NY, USA)
Reconstruction of large multi-view Datasets and Application to the C. elegans dauer diapause
-- invited talk, organized by Dirk Padfield

Invited Tutorial, Talks, Chair@Focus on Microscopy Conference
(13-16 April 2014, Sydney, Australia)

Superresolution Hackathon@EMBL Heidelberg
(27 February - 2 March 2014, Heidelberg, Germany)
-- organized by Jonas Ries

Teaching Image Processing@University College Dublin
(Week of 20 February 2014, Dublin, Ireland)
-- invited by Emmanuel Reynaud

2013

Talk@EMBL Group Leader Symposium
(11 December 2013, Heidelberg, Germany)
In-toto analysis of the C. elegans dauer diapause

Fiji Workshop@The Fifth Light Sheet based Fluorescence Microscopy Workshop
(15-17 September 2013, Zeiss Headquarters, New York, USA)

Talk@The Fifth Light Sheet based Fluorescence Microscopy Workshop
(15-17 September 2013, Zeiss Headquarters, New York, USA)
Efficient Bayesian Multi-View Deconvolution

Attendence@Transcription Imaging Consortium Meeting
(3-4 September 2013, HHMI Janelia Farm, USA)

Attendence@The 19th International C. elegans Meeting
(26-30 June 2013, UCLA, Los Angeles, USA)

Hackathon@University of Wisconsin-Madison
(30 Apr-3 May 2013, Madison, USA)
Organized by Kevin Eliceiri with focus on integration of ImgLib2 and ImageJ2

Talk@IEEE ISBI 2013 (7-11 Apr 2013, San Francisco, USA)
Efficient Bayesian Multi-View Deconvolution

Hackathon@Janelia Farm Research Campus
(11-22 Mar 2013, Ashburn, USA)
Organized by Albert Cardona, with focus on representation of large datasets using CATMAID

2012

Workshop@ImageJ Conference 2012 (24-26 Oct 2012, Mondorf les Bains, Luxemburg)
Introduction to ImgLib2

Attendence@The Fourth Light Sheet based Fluorescence Microscopy Workshop
(19-21 Sep 2012, Frankfurt, Germany)

Attendence@GAIN-Tagung (7-9 Sep 2012, Boston, USA)

Talk@Janelia Farm Transcription Imaging Consortium Meeting
(3-5 Sep 2012, Janelia Farm Research Campus, Ashburn, USA)
Reconstruction of Multi-Focal Plane Microscopy Data

Talk@3rd Max Planck Society LeadNet Meeting (8-9 May 2012, Berlin, Germany)
Image Registration using ImgLib

Teaching Image Processing@University College Dublin
(Week of 20 February 2012, Dublin, Ireland)
-- with Emmanuel Reynaud

2011

Fiji/ImageJ2 Hackathon@Max Planck Institute of Molecular Cell Biology and Genetics
(10-19 December, Dresden, Germany)

Fiji Workshop@The Third Light Sheet based Fluorescence Microscopy Workshop
(12-14 October, ITAV Toulouse, France)

Attendence@Vision and Sports Summer School (22-26 August 2011, Zürich, Switzerland)

Talk@Max-Delbrück Center for Molecular Medicine (9 September 2011, Berlin, Germany)
In-toto Reconstruction of Drosophila Embryogenesis by processing Selective Plane Illumination Microscopy Images

Poster@4th Berlin Summer Meeting "Computational & Experimental Molecular Biology"
(23-25 June 2011, Berlin, Germany)
Terminal exon pausing: functional coupling of transcription and splicing load to widespread cotranscriptional splicing
-- with Fernando Carrillo-Österreich (MPI-CBG)

Talk@OME User's Meeting 2011
(15-16 June 2011, Paris, France)
Processing Multi-View Selective Plane Illumination Microscopy Data

Talk@Focus on Microscopy Conference (17 April 2011, Konstanz, Germany)
Nuclei-based Registration of Selective Plane Illumination Microscopy Data

Talk@EMBL (21 February 2011, Heidelberg, Germany)
Reconstruction of Multi-Tile Microscopic Acquisitions

Talk@HHMI Janelia Farm (10 February 2011, Ashburn, USA)
Reconstruction of Multi-Tile Microscopic Acquisitions

ImageJ2 Hackathon@University of Wisconsin-Madison
(27 January-11 February, Madison, USA)

Talk@CALTECH (26 January 2011, Pasadena, USA)
Reconstruction of Multi-Tile Microscopic Acquisitions

Talk@IST Austria (18 January 2011, Vienna, Austria)
Reconstruction of Multi-Tile Microscopic Acquisitions

2010

Image Processing Workshop@Janelia Farm Research Campus (2-3 December, Ashburn, USA)

Workshop@ImageJ Conference 2010 (27-29 October 2010, Mondorf les Bains, Luxemburg)
Into ImgLib - Generic Image Processing in Java

Talk@The Second Light Sheet based Fluorescence Microscopy Workshop
(2-4 September 2010, UCD, Dublin, Ireland)
Nuclei-based registration of selective plane illumination microscopy data

Talk@51st Annual Drosophila Research Conference
(10 April 2010, Washington D.C., USA)
Reconstruction of Multi-Tile Microscopic Acquisitions

Talk@Focus on Microscopy Conference (31 March 2010, Shanghai, China)
Reconstruction of Multi-Tile Microscopic Acquisitions

Talk@Janelia Farm Single Cell Biochemistry Consortium
(5 Feb 2010, Janelia Farm Research Campus, Ashburn, USA)
Looking at Development from new Angles - Processing Selective Plane Illumination Microscopy Images

Hackathon (15-27 Mar 2010, Heidelberg, Germany)
Hackathon at the EMBL with focus on Visualization and Image Processing

2009

Talk@The First Light Sheet based Fluorescence Microscopy Workshop
(September, MPI-CBG, Dresden, Germany)
Bead-based registration framework for sample independent multi-view SPIM image reconstruction

Talk@Workshop: Tools and resources for high resolution protein localization analysis in C. elegans (June, UCLA, Los Angeles, USA)
Single Plane Illumination Microscopy for isotropic high resolution 3D imaging in C. elegans

Talk@MPI-CBG Dresden (24 Apr, Dresden, Germany)
Looking at development from new angles - SPIMage processing

Talk@Focus on Microscopy Conference (5-8 Apr, Krakow, Poland)
Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching

Hackathon (22 Mar-4 Apr, Dresden, Germany)
Hackathon at the MPI-CBG Dresden with focus on Image Registation and Segmentation

Talk@Duke University, hosted by Uwe Ohler (18 Feb 2009, Durham, North Carolina, USA)
Mosaicing of Single Plane Illumination Microscopy Data and its Perspectives

Poster@SPIE Medical Imaging Conference (7-12 Feb 2009, Disneyland, Orlando, USA)
Bead-based Mosaicing of Single Plane Illumination Microscopy Images using Geometric Local Descriptor Matching

2008

Hackathon (8-13 Dec, Zürich, Switzerland)
Hackathon at the INI Zürich with focus on Image Registation and Data Visualization

Talk@ ImageJ Conference (6-7 Nov, Luxemburg)
Fast Stitching of Large 3D Biological Datasets

Hackathon (2-14 Jun, Ashburn, USA)
Hackathon at the Janelia Farm Research Campus with focus on Image Registation

5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro
(14-17 May, Paris, France)
Towards Digital Representation of Drosophila Embryogenesis

FIJI-Hackathon (21-30 Apr, Dresden, Germany)
Hackathon at the Max Planck Institute of Molecular Cell Biology and Genetics in Dresden with focus on the new FIJI Project

Talk@Focus on Microscopy Conference (13-16 Apr, Osaka, Japan)
Image Analysis Pipline for Efficient Registration of Multi-View SPIM Microscopy Data

Talk@SPIE Medical Imaging Conference (17-21 Feb, San Diego, USA)
Mosaicing of Single Plane Illumination Microscopy Images Using Groupwise Registration and Fast Content-Based Image Fusion

Talk@Terry Speed/Sandrine Dudoit Statistics and Genomics Joint Group Meeting
(25 Jan, Berkeley, USA)
The Hook Method: Calibration of Microarray Gene Expression Data

2007

Talk@European Drosophila Research Conference (12-14 Sep, Vienna, Austria)
Computational Representation of Drosophila Embryonic Development

Hackathon (1-15 Jun, Ashburn, USA)
Hackathon at the Janelia Farm Research Campus with focus on Image Registation