Homepage of Stephan Preibisch
PhD student in Tomancak Lab at Max Planck Institute of Molecular Cell Biology and Genetics in Dresden
News
14/06/2010 10:25 am
Pavel made it into the news today, a funny article about him and the stuff we are doing in his lab, written by Sabine Sütterlin: Wo Fruchtfliegenembryos zu Filmstars werden (German) (Where fruit flies become movie stars).
27/05/2010 5:10 pm
Our paper Software for bead-based registration of selective plane illumination microscopy data has been published today
by Nature Methods, check out the publication section.
The corresponding software will be released next week with the new Fiji
"Heidelberg" Release!
20/04/2010 11:05 am
In the context of Fiji we (Stephan Saalfeld and me) released a first alpha version of ImgLib, a dimension-, storage- and data-type-independent image processing library for Java. If you want to try it please contact me!
20/04/2010 11:00 am
During the last month I was traveling a lot giving talks at the Focus on Microscopy Conference
in Shanghai as well as the 51st Annual Drosophila Research Conference in Washington and the
Janelia Farm Single Cell Biochemistry Consortium at the Janelia Farm Research Campus.
Furthermore, I participated in a new Hackathon which was held at the EMBL in Heidelberg. During the meeting
we organized a workshop on Image registration together with Stephan Saalfeld and
Ignacio Arganda. Thanks a lot to Kota Miura and Francesca Peri from the
EMBL for hosting us.
11/10/2009 5:40 pm
Three weeks ago I visited the very impressive International Symposium at the Studio Villa Bosch in Heidelberg, the topic was Subcellular Microscopy and Probing.
11/10/2009 11:52 am
We recently hosted The First Light Sheet based Fluorescence Microscopy Workshop here in the MPI in Dresden. The workshop turned out to be very interesting and helpful, the aims are now to start building a light sheet community via the conference webpage.
11/10/2009 11:50 am
This summer I have been to the 17th International C. elegans Meeting in Los Angeles where I presented our Bead-based registration
framework and it's applicability to high-resolution C. elegans imaging.
On the way back I stopped in the lab of Rob Singer at the Einstein College in New York
to present our work as well, it was a very nice experience.
05/04/2009 1:01 pm
I have been attending the Focus on Microscopy conference in Krakow, Poland. The conference was really good, I will try to go next year to Shanghai again. A link to the abstract my presentation can be found here.
03/02/2009 1:16 pm
I am soon leaving for the SPIE Medical Imaging Conference in Orlando/Florida presenting our newest paper.
02/02/2009 9:16 pm
I had serious issues solving a memory problem under MikTeX (Win32) using pdflatex (TeX capacity exceeded, sorry [main memory size=1500000]). Altough changing the configuration files as proposed in the manual (initexmf --edit-config-file=pdflatex) the max memory only increased to 3.6MB. There are also thousands (not that many but it feels like that) command line options which are supposed to solve the problem, however only one of them worked, which is --extra-mem-top=n. I hope this can help somebody who is stuck with the same problem.
08/12/2008 10:16 pm
I am currently visiting Albert Cardona's lab at the INI Zürich for another Hackathon. I hope to get a lot of stuff done I usually do not work on.
17/09/2008 11:21 am
The provisional PDFs of our Hook calibration papers are now available for download from the Algorithms for Molecular Biology Website. You can find the direct links in the publications section.
17/09/2008 11:20 am
In November the annual ImageJ conference will take place in Luxembourg, I will give a presentation as well. Click the image below for more information.
06/08/2008 9:50 pm
Our two papers describing the Hook Method in detail have been accepted today. I will put them for download the publications section as far as the last changes have been made.
31/07/2008 9:09 pm
A lot of stuff happened in the last half of the year. I went to the Focus on Microscopy Conference
in Osaka/Japan and the IEEE ISBI in Paris/France to present my new SPIM
registration algorithm (details here). We also had another amazing hacking event
at the Janelia Farm Research Campus near Washington D.C.
Soon I will officially release the new Stitching Package for ImageJ, it is now possible to stitch complete 3D grids
of images, globally optimized (thanks to Stephan Saalfeld) and nicely
intensity adjusted. I will present it on the ImageJ conference in November, a preliminary package is available
here. It contains as well the Stiching2D and Stitching3D plugins for stitching
two images.
17/02/2008 7:09 pm
You can finally download the first offical release of the Hook-Method for Microarray Data Analysis in the Software Section. You will also find the corresponding paper there. I also presented the Hook-Method at the Terry Speed Group Meeting on the 25/01/2008 in Berkeley.
30/12/2007 7:33 pm
target="_blank"Dr. Hans Binder presented our work
on the analysis of Microarray Data at the BioInfo Summer 2007
in Canberra, Australia.
The Oligo-Software will hopefully be released next week. You will be able to download it in the Software
Section and on the IZBI Homepage.
30/12/2007 7:33 pm
I am visiting the SPIE Medical Imaging Conference which takes place in San Diego from the 16th till the 21st February. I'll give a talk on Mosaicing of Single Plane Illumination Microscopy. Before that I'll stay for 5 weeks at the Stanford Research Institute in the lab of Torsten Rohlfing.
12/10/2007 2:01 pm
I am impressed how easy it was to install Ubuntu 7.10 x64 edition on the M1330. There were just no problems and everything worked immediately. Unfortunately it seems it is not possible to attach another monitor with a different resolution than the LCD screen of the notebook. I hope this issue will be fixed with one of the next updates.
12/06/2007 4:36 pm
I finally got my new notebook, it is a nice Dell M1330. I like it so far, especially the LED screen
is just amazing. Nevertheless I had some problems installing WindowsXP x64 as Dell does not provide
all drivers for the 64 Bit operating systems. For all those out there who have the same problem i
wrote a small HowTo, see here:
Dell M1330 WindowsXP x64 Installation HowTo
Tomorrow I will install Ubuntu 7.10, let's see how this goes. :)
11/07/2007 1:51 pm
We got an article in the HHMI (Howard Hughes Medical Institute) Bulletin about the great Hackathon at Janelia Farm this summer. Thanks again to Albert Cardona and Arnim Jenett for organizing this event and Gerald M. Rubin for the sponsoring!
11/07/2007 1:30 pm
Together with
Dr. Hans Binder from the IZBI
we finally finished the first publication on our Oligo-Method for analyzing gene expression arrays.
The Java program will be published in my Software section.
11/07/2007 1:28 pm
I am really happy that I got accepted together with Torsten Rohlfing for the SPIE Medical Imaging Conference in San Diego in February. I'll also spend some time before at his institute (Stanford Research Institute) in San Fransisco.
11/07/2007 1:01 pm
Lots of stuff happened since my last entry. I held my first talk at a big conference in Vienna, the EDRC 2007 which was a great event.
20/08/2007 3:18 pm
My next TAC meeting is on 19th September. Learn more ....
20/08/2007 3:18 pm
I am visiting CAIP 2007 in Vienna from 26th August till 30th August. Learn more ....